G.G.
I'm from that area, and there are a few other things I can recommend with kids: the beach! (go to the ocean side of town by Golden Gate park), the aquarium in Golden Gate Park, the Exploratorium (a huge hands-on museum for kids that explains scientific phenomena), the Marin headlands on the north side of the Golden Gate for a fantastic overlook view of the city and ocean, and Muir Woods for a beautiful walk through the Redwoods. If you want to get out of town and see the wine country, I recommend Sonoma. You can get there in 30 minutes. It's built around an historic town square from Spanish colonial days. The square has a park and playground for kids, duck pond, etc. surrounded by cute shops and eateries. Our absolute favorite is the Sonoma Cheese Factory for deli sandwiches that are out of this world (ask for the sourdough roll). Of course, there's plenty of wineries in and around Sonoma too!